Alignment of NLV strains where age is <1
0 10 20 30 40 50
|---------|---------|---------|---------|---------|---------
HILLINGDON GCTGACTCTCTGTGCTTTGTCTGAAGTCACCAACCTGTCTCCTGACATCGTGCAGGCAAA
MELKSHAM CCTCACCCTATGTGCTCTTTCTGAAGTCACAGACCTTTCTCCTGACATTGTGCAGGCCAA
HARROW_II CCTAACACTATGTGCGCTGTCTGAAGTCACAGATCTGTCCCCTGACATCATCCAGGCAAA
HAWAII_Rot CCTCACACTCTGCGCACTCTCTGAAACTACAAATCTGTCCCCTGACATCATCCAGGCAAA
BRISTOL_Gr TCTCACTCTCTGTGCGCTCTCTGAAGTTACAAACTTGTCTCCTGACATCATACAGGCTAA
HAWAII_Ste TCTCACGCTCTGTGCACTCTCTGAAGTGACAAATTTATCTCCTGACATCATCCAAGCAAA
TORONTO_24 GCTTACTCTGTGTGCCCTTTCTGAAGTGACAGGACTAGGCCCCGACATCATACAAGCTAA
AMSTERDAM_ CCTGACCCTCAGTGCTATGTCCGAGGTCTCTGGTCTTTCACCTGAGGTTGTGCAAGCCAA
LEEDS_Guer CCTAACTTTGAGTGCAATGGCAGAAGTGTCAGGTCTTTCACCAGATGTTGTCCAAGCTCA
SOUTHAMPTO GATAACTTTGTGTGCCCTCTCTGAGGTTACTGGCCTATCACCAGATGTTATTCAGTCCAT
VALETTA GATCACATTGTGTGCCATGTCTGAAGTCACAGGCTTATCACCCGATGTCATACAGTCCCA
DESERT_SHI CCTAACTCTATGTGCACTGTCAGAAGTCACTGGTTTGTCCCCTGATGTAATACAGTCACA
KSR2A/2001 CTATACTTTGTGTGCCTTATCAGAAGTTACTGGCTTGGCCCCTGATGTGATACAGTCACA
GHANA AATCACCCTTTGTGCCCTCTCTGAAGTCACCGGACTTTCTCCTGATGTGATACAGTCACA
NORWALK_Ro AATTACCCTCTGTGCACTCTCTGAAGCCACCGGTCTGTCACCTGATGTAGTGCAATCCAT
ALPHATON_S CGTCACTCTCACATCCATGGCTGAGGCCACTGGCCTGGACCCTGACATCGTCCAGGCTAA
2013137 GCTGACTCTCTGTGCTTTGTCTGAAGTCACCAACCTGTCTCCTGACATCGTGCAGGCAAA
2013128 GCTGACTCTCTGTGCTTTGTCTGAAGTTACCAACCTGTCCCCTGACATCGTGCAGGCAAA
2013718 CCTGACCCTCAGTGCTATGTCCGAGGTCTCTGGCCTTTCACCTGAGGTTGTGCAAGCCAA
2013142 TCTAACTTTGAGTGCAATGGCAGAAGTGTCAGGTCTCTCACCAGATGTTGTCCAAGCTCA
2102970 CCTCACACTATGTGCACTGTCTGAAGTCACAGATCTGTCCCCTGACATCATCCAGGCAAA
2162446 CCTCACACTATGTGCGCTGTCTGAAGTCACAGATCTGTCCCCTGACATCATCCAGGCAAA
2159636 CCTCACACTATGTGCGCTGTCTGAAGTCACAGATCTGTCCCCTGACATCATCCAGGCAAA
2242832 CCTCACACTATGTGCGCTGTCTGAAGTCACAGATCTGTCCCCTGACATCATCCAGGCAAA
2160010 CCTCACACTATGTGCGCTGTCTGAAGTCACAGATCTGTCCCCTGACATCATCCAGGCAAA
2224619 CCTCACACTATGTGCGCTGTCTGAAGTCACAGATCTGTCCCCTGACATCATCCAGGCAAA
2224620 CCTCACACTATGTGCGCTGTCTGAAGTCACAGATCTGTCCCCTGACATCATCCAGGCAAA
2277896 TCTCACTCTCTGTGCGCTCTCTGAAGTTACGAATCTGTCCCCTGACATCATACAGGCTAA
2264053 TCTCACTCTCTGTGCGCTCTCTGAAGTTACGAATCTGTCCCCTGACATCATACAGGCTAA
2264054 TCTCACTCTCTGTGCGCTCTCTGAAGTTACGAATCTGTCCCCTGACATCATACAGGCTAA
2266024 TCTCACTCTCTGCGCGCTCTCTGAAGTTACAAATCTGTCCCCTGACATCATACAGGCTAA
2013593 CCTCACCCTTTGTGCACTCTCTGAAGTCACGAACCTATCCCCTGACATCATACAAGCTAA
2045554 CCTCATCCTCTGTGCACTTTCTGAGGTCACAAACCTGTCCCCTGATATTATCCAGGCCAA